Marine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South FloridaMarine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida

PUBLICATIONS

Paul, J.H. 2008. Marine prophages: dangerous molecular time bombs or the key to survival in the oceans? ISME Journal 2:579-589.

Mobberley, J.M., Authement, N., Paul, J.H., Koomen, Segall, A.M. 2008. Complete genome sequence of ФHAP-1, a linear plasmid-like temperate marine phage of Halomonas aquamarina J. Virol. 82:6618-6630

Long, Amy, Lauren D. McDaniel, Jennifer Mobberly and J.H. Paul. 2008. Differences in Prophage Induction Between Heterotrophic and Autotrophic Microbial Populations in the Gulf of Mexico. ISME J. 2:132-144

John,D.E., Z.A. Wang, X. Liu, R.H. Byrne, J.E. Corredor, J.M. López, A. Cabrera, D.A. Bronk, and J.H. Paul. 2007. "Carbon fixation gene (RuBisCO) transcripts and CO2 flux in the Mississippi River Plume." The ISME Journal 1(6): 517-531

Long, A.K., S.S. Patterson, and J.H. Paul. 2007. "Macroarray Analysis of Gene Expression in a Marine Pseudotemperate Bacteriophage." Aquatic Microbial Ecology 49:1-14
Paul, J.H., C. Scholin, G. van den Engh, and M.-Jane Perry. 2007. "In situ instrumentation." Oceanography 20:70-78
John, D.E. and J.H. Paul. 2007. "Enhanced quantitative reverse transcription PCR assays for measurement of ribulose 1,5 bisphosphate carboxylase/oxygenase gene expression from marine phytoplankton." Marine Biotechnology 9:747-759
Casper, E.T., Stacey S. Patterson, Pragnesh Bhanushali, Andrew Farmer, M. Smith, David P. Fries, John H. Paul. 2007. "A Handheld NASBA Analyzer for the Field Detection and Quantification of Karenia brevis." Harmful Algae 6:112-118
Devereux, R., P. Rublee, J.H. Paul, K.G. Field and J.W. Santo Domingo. 2006. "Development and applications of microbial ecogenomic indicators for monitoring water quality: Report of a workshop assessing the state of the science, research needs, and future directions." Environ. Monit. Assess. 116: 459-479
Scott, KM, F.N. Abril, L.A. Ball, C.J. Barrett, R. A. Blake, A. J. Boller, P. Chain, J.A. Clark, C. R. Davis, C. Detter, K. P. Dobrinski, B. I. Faza, K. I. Fearn, K. Fitzpatrick, S. K. Freyermuth, T. Harmer, L. J. Hauser, C. A. Kerfeld, W. W. Kong, M. Land, A. Lapidus, F. Larimer, D. L. Longo, S. Lucas, S.Massey, D. D. Martin, Z. McKinness, F. Meyer, J. L. Moore, L. H. Ocampo, J. H. Paul, I.Paulsen, D. K. Reep, R. L. Ross, P. Y. Sato, P. Thomas, L. E. Tinkham, G.T. Zeruth, and S. Sievert. 2006. "Complete genome sequence of the deep-sea hydrothermal vent chemolithoautotroph, Thiomicrospira crunogena." PLos Biology 4:2196-2222.
McDaniel, L., DelaRosa, M. and J.H. Paul. 2006. "Temperate and lytic cyanophages from the Gulf of Mexico." J. Mar. Biol. Assoc. UK 86:5280-5290
Williamson, S.J. and J.H. Paul. 2006. "Environmental factors that influence the transition from lysogenic to lytic existence in the ΦHSIC/Listonella pelagia marine phage-host system." Microb. Ecol. Online first, p1-9
Patterson, S.S., O. Neumann, A. Farmer, M. Smith, E.T. Casper, D. Huffman, L. Stark, D. Fries and J. H. Paul. 2006. "A Nucleic Acid Sequence Based Amplification (NASBA) Assay for Real – Time Detection of Norovirus Genogroup II." Journal of Applied Microbiology 101:956-963.
John, D.E., B. Wawrik, J.H. Paul, and F. R. Tabita. 2006. "Gene diversity and organization in rbcL-containing genome fragments from uncultivated Synechococcus in the Gulf of Mexico." Marine Ecol. Progr. Ser. 316:23-33
McDaniel, L.D., M. dela Rosa, and J.H. Paul. 2006. "Temperate and lytic cyanophages from the Gulf of Mexico". J. Mar. Biol. Ass. U.K. 86:517-527
McDaniel, L., V. McGee, and J.H. Paul. 2005. "Use of the marine prophage induction assay (MPIA) to detect environmental mutagens." Estuaries 28:634-642
Paul, J.H. and M.B. Sullivan. 2005. "Marine phage genomics: what have we learned?" Curr. Opin. Biotech. 16:299-307

Paul, J.H. and M.B. Sullivan. 2005. "Marine phage genomics-what have we learned?" Curr. Opin. Biotechnol . 16:299-307.

Casper, E.T. S. S. Patterson, M.C. Smith, and J.H. Paul. 2005. "Development and Evaluation of a Method to Detect and Quantify Enteroviruses Using NASBA and Internal Control RNA (IC-NASBA)." J. Virol. Meth. 124:149-155.

Patterson, S.S. E.T. Casper, L. Garcia-Rubio, M.C. Smith and J.H. Paul. 2005. "Increased Precision of Microbial RNA Quantification using NASBA with an Internal Control (IC-NASBA)." J. Microb. Methods 60:342-352.
McDaniel, L., and J.H. Paul. 2005. "Effect of Nutrient Addition and Environmental Factors on Prophage Induction in Natural Populations of Marine Synechococcus." Applied and Environmental Microbiology 71:842-850.
Paul, J.H., Shannon J. Williamson, Amy Long, David John, Anca Segall, and Forest Rohwer. 2005. "The Complete Genome of ΦHSIC, a Pseudotemperate Marine Phage of Listonella pelagia." Applied and Environmental Microbiology 71:3311-3320.
Corredor, J.E., Boris Wawrik, John H. Paul, Lee Kerkhof, José M. López and Angel Dieppa. 2004. "The Geochemical Rate/RNA Integration Study (Grist): I. Rubisco Transcription And Photosynthetic Capacity Of Planktonic Photoautotrophs." Applied and Environmental Microbiology 70: 5459-5468.
Casper, E.T., John H. Paul, Matthew C. Smith, and Michael Gray. 2004. "The detection and quantification of the red tide Dinoflagellate Karenia brevis by real-time NABSA." Appl. Environ. Microbiol. 70:4727-4732.
Wawrik, B., John H. Paul, Deborah A. Bronk, David John, Mike Gray. 2004. "High rates of ammonium recycling drive phytoplankton productivity in the offshore Mississippi River plume found in the oligotrophic Gulf of Mexico." Aquatic Microbial Ecology 35:175-184.
Williamson, S.J. and J.H. Paul. 2004. "Nutrient stimulation of lytic phage production in bacterial populations of the Gulf of Mexico." Aquat Microb Ecol 36: 9-17.
Wawrik, B. and J.H. Paul. 2004. "Phytoplankton community structure and productivity along the axis of the Mississippi River Plume." Aquat. Microb. Ecol. 35:185-196.
Kerkhof, L., J. Corredor, J. Lopez, J. Paul, D. Bronk, and J. Cherrier. 2003. "Experiment explores inter-calibration of biogeochemical flux and nucleic acid measurmements." Eos 84:167-168.
Gray, M., B. Wawrik, and J.H. Paul. 2003. "Molecular detection and quantitation of the red tide dinoflagellate Karenia brevis in the marine environment." Appl. Environ. Microbiol. 69:5726-5730.
Griffin, D.W., K.A. Donaldson, J.H. Paul, and J.B. Rose. 2003. "Pathogenic human viruses in coastal waters." Clin. Microbiol. Rev. 16:129-143.
Wawrik, B., J.H. Paul, L. Campbell, D. Griffin, L. Houchin, A. Fuentes-Ortega, and F. Muller-Karger. 2003. "Vertical Structure of the Phytoplankton Community associated with a Coastal Plume in the Gulf of Mexico." Mar. Ecol. Progr. Ser. 251:87-101.
Paul, J.H., M.B. Sullivan, A.M. Segall, and F. Rohwer. 2002. "Marine phage genomics." Comp. Biochem. Physiol. Part B. 133:463-476.
Williamson, S., L. McDaniel, L. Houchin, and J.H. Paul. 2002. "Seasonal variation in lysogeny as depicted by prophage induction in Tampa Bay, Florida." Applied and Environmental Microbiology. 68:4307-4314.
Paul, J.H., H. Houchin, D. Griffin, T. Slifko, M. Guo, B. Richardson, and K. Steidinger. 2002. "A filterable lytic agent obtained from a red tide bloom that caused lysis of Karenia brevis (Gymnodinium breve) cultures." Aquatic Microbial Ecology 27:21-27.
L. McDaniel, L. Houchin, S. Williamson and J.H. Paul. 2002. "Lysogeny in Natural Populations of Marine Synechococcus." Nature 415:496.
Donaldson, K.A., D.W. Griffin, and J.H. Paul. 2002. "Detection, quantitation, and identification of enteroviruses from surface waters and sponge tissue from the Florida Keys using Real Time RT-PCR." Water Res. 36:2505-2514.
Wawrik, B. , J.H. Paul, and F.R. Tabita. 2002. "Real Time PCR Quantification of rbcL (Ribulose bisphosphate carboxylase/oxygenase) mRNA in diatoms and pelagophytes." Applied and Environmental Microbiology 68:3771-3779.
Kellogg, C.A. and J.H. Paul. 2002. "Degree of ultraviolet radiation damage and repair capabilities are related to G+C content in marine phages." Aquatic Microbial Ecology 27:13-20.
Paul, J.H. 2001. "Marine Microbiology." Methods in Microbiology Series, vol. 30. Academic Press, 666 p.
Paul, J.H. and S. Jiang. 2001. "Lysogeny and transduction." In: J.H. Paul, ed. Marine Microbiology. Methods in Microbiology vol 30. 106-125.
Paul, J.H. 2001. "Gene expression by mRNA analysis." In: J.H. Paul, ed. Marine Microbiology. Methods in Microbiology vol 30. 395-408.
McDaniel, L, Griffin, D.W., J. Crespo-Gomez, M.R. McLaughlin and J.H. Paul. 2001 "Development of a marine prophage induction assay." Marine Biotech. 3: 528-535.
Williamson, S., M. R. McLaughlin, and J.H. Paul. 2001. "Interaction of a marine virus with its host: Lysogeny or pseudolysogeny?" Appl. Environ. Microbiol. 67:1682-1688.
Paul, J.H., J.B. Kang, and F.R. Tabita. "2000 Diel patterns of regulation of rbcL transcription in a cyanobacterium and a prymnesiophyte." Marine Biotechnology 2:429-436.
Paul, J.H., A. Alfreider, and B. Wawrik. 2000. "Micro and macrodiversity in rbcL sequences in ambient phytoplankton populations from the Southeastern Gulf of Mexico." Mar. Ecol. Prog. Ser 198:9-17.
Paul, J.H., A. Alfreider, J.B. Kang, R.A. Stokes, D. Griffin, L. Campbell, and E. Ornolfsdottir. 2000. "Form IA rbcL transcripts associated with a low salinity/high chlorophyll plume ("Green River") in the Eastern Gulf of Mexico." Mar. Ecol. Prog. Ser 198:1-8.
Siefert, J. L., M. Larios-Sanz, L. K Nakamura, R.A. Slepecky, J.H. Paul, E.R.B. Moore, G.E. Fox, and P. Jurtshuk, Jr. 2000. "Phylogeny of Marine Bacillus isolates from the Gulf of Mexico." Current Microbiology 41:84-88.
Griffin, D.W., R. Stokes, J.B. Rose, and J. H. Paul III. 2000. "Bacterial indicator occurrence and the use of an F+ specific RNA coliphage assay to identifiy fecal sources in Homosassa Springs, Florida." Microbial Ecology 39:56-64.

Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida Copyright © 2008, University of South Florida, College of Marine Science 140 7th Avenue S., St. Petersburg, FL 33701 Marine Microbiology Group - College of Marine Science - University of South Florida
Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida Marine Microbiology Group - College of Marine Science - University of South Florida