Casper, E.T., Paul, J.H., Smith, M.C., and Gray, M. 2004. The detection and quantification of the red tide Dinoflagellate Karenia brevis by real-time NABSA. Appl. Environ. Microbiol. 70:4727-4732. (12/04)

Carnahan, E.A., Hoare, A.M., Hallock, P., Lidz, B.H., and Reich, C.D. 2008. Distributions of Heavy Metals and Foraminiferal Assemblages in Sediments in Biscayne Bay, Florida, USA. Journal of Coastal Research 24(1):159-169. (01/08)

Sammarco, P.W., Hallock, P., Lang, J.C., LeGore, R.S. 2007. Roundtable Discussion Groups Summary Papers: Environmental Bio-Indicators in Coral Reef Ecosystems: The Need to Align Research, Monitoring, and Environmental Regulation. Environmental Bioindicators 2(1):35-46. (01/08)

Pomar, L., Hallock, P. 2007. Changes in coral-reef structure through the Miocene in the Mediterranean province: Adaptive versus environmental influence. Geology 35:899-902. (01/08)

Fisher, E.M., Fauth, J.E., Hallock, P, Woodley, C.M. 2007. Lesion regeneration rates in reef-building coral Montastraea spp. as indicators of colony condition. Marine Ecology Progress Series 339:61-71 (01/08)

Crevison, H, Hallock, P. 2007. Anomalous features observed on tests of live Archaiasine foraminifers from the Florida Keys, USA. Journal of Foraminiferal Research 37(3):223-233. (01/08)

Pichler, T., Amend, J.P., Garey, J., Hallock, P., Hsia, N.P., Karlen, D.J., Meyer-Dombard, D.R., McCloskey, B.J., and Price, R.E. 2006. A natural laboratory to study arsenic geobiocomplexity. EOS 87(23): 221,225. (01/08)

Hallock, P., Williams, D.E., Fisher, E.M., and Toler, S.K. 2006. Bleaching in Foraminifera with algal symbionts: implications for reef monitoring and risk assessment. Anuário do Instituto de Geosciências – UFRJ, 29(1): 108-128. (01/08)

Hallock, P., Williams, D.E., Toler, S.K., Fisher, E.M., and Talge, H.K. 2006. Bleaching in reef-dwelling foraminifers: implications for reef decline. Proceedings, 10th International Coral Reef Symposium, Okinawa, Japan, June 2004. pp. 729-737. (01/08)

Hallock, P., Sheps, K., Chaproniere, G.C.H., and Howell, M. 2006. Larger benthic foraminifers of the Marion Plateau, NE Australia (ODP Leg 194): Comparison of faunas from bryozoan (Site 1193, 1194) and red-algal (Site 1196-98) dominated carbonate platforms. Proceedings of the Ocean Drilling Program Scientific Results, Volume 194, Chapter 2, p. 1-31. (01/08)

Downs, C.A., Fauth, J.E., Wetzl, D., Hallock, P., Halas, J.F., Halas, J.C., Curry, R., and Woodley, C.M. 2006.Investigating coral reef degradation at Alina’s Reef in Biscayne National Park: White grunt (Haemulon plumerieri) as a biological indicator. Environmental Forensics 7:15-32. (01/08)

Crevison, H, Hallock, P., Mcrae, G. 2006. Sediment Cores from the Florida Keys (USA): Is Resolution Sufficient for Environmental Applications? Journal of Environmental Micropaleontology, Microbiology, and Meiobenthology 3: 61-82. (01/08)

Hallock, P. 2005. Global change and modern coral reefs: New opportunities to understand shallow-water carbonate depositional processes. Sedimentary Geology. Available online at: http://dx.doi.org/10.1016/j.sedgeo.2004.12.027 (04/05)

Mann, D.A., Colbert, D.E., Gaspard, J.C. III, Casper, B.M., Cook, M.L.H., Reep, R.L., Bauer, G.B. 2005. Temporal resolution of the manatee (Trichechus manatus) auditory system. J. Comp. Physiol. 191: 903-908.(12/05)

Popper, A.N., Smith, M.E., Cott, P., Hanna, B., MacGillivray, A., Austin, M., and Mann, D. 2005. Effect of seismic air-gun use on fish hearing. J. Acoust. Soc. Am. 117: 3958-3971.(06/05)

Mann, D.A., Popper, A.N., and Wilson, B. 2005. Herring do not detect ultrasound. Proc. Roy. Soc. Lond. Biol. Let. 1: 158-161.(06/05)

Egner, S. A., and Mann, D.A. 2005. Auditory sensitivity of sergeant major damselfish (Abudefduf saxatilis) from post-settlement juvenile to adult. Mar. Ecol. Prog. Ser. 285: 213-222.(06/05)

Chemical Oceanography

Luo, Yu-Ran. 2007. Comprehensive Handbook of Chemical Bond Energies. Available from CRC Press

Cardenas-Valencia, A.M., R.H. Byrne and E.T. Steimle. 2006. Development of Stripped-Cladding Optical Fiber Sensors for Continuous Monitoring I: Theoretical Study of a Referencing Method for Measuring Refractive Indices of Fluids. Sensors and Actuators B 115: 178-188.

Quinn, K.A., R.H. Byrne and J. Schijf. 2006. Sorption of Yttrium and Rare Earth Elements by Amorphous Ferric Hydroxide. Marine Chemistry 99: 128-150.

Byrne, R.H., W. Yao, K. Klochko, J,A. Tossell and A.J. Kaufmam. 2006. Experimental evaluation of the isotopic exchange equilibrium 10B(OH)3 + 11B(OH)4 = 11B(OH)3 + 10B(OH)4 in aqueous solution. Deep-Sea Research I 53: 684-688.

Quinn, K.A., R.H. Byrne and J. Schijf. 2006. Sorption of yttrium and rare earth elements by amorphous ferric hydroxide: Influence of Solution complexation with carbonate. Geochimica et Cosmochimica Acta 70: 4151-4165.

Liu, X.,Z. Wang, R.H. Byrne, E.A. Kaltenbacher and R.E. Bernstein. 2006. Spectrophotometric Measurements of pH in-Situ: Laboratory and Field Evaluations of Instrumental Performance. Environmental Science and Technology 40: 5036-5044.

Cardenas-Valencia, A.M., R.H. Byrne, M. Calves, L. Langebrake, D. P. Fries and E.T. Steimle. 2006. Development of stripped-cladding optical fiber sensors for continuous monitoring II: Referencing method for spectral sensing of environmental corrosion. Sensors and Actuators B (in-press)

Klochko, K, A.J. Kaufman, W. Yao, R.H. Byrne and J.A. Tossell. 2006. Experimental measurement of boron isotope fractionation in seawater. Earth and Planetry Science Letters (in-press)

Pilsbury, L.A. and R.H. Byrne. 2006. Spatial and Temporal Chemical Varialibility in the Hillsborough River System. Marine Chemistry (in-press)

Short, R.T., S.K. Toler, G.P.G. Kibelka, D.T. Rueda Roa, R.J. Bell and R.H. Byrne. 2006. Detection and quantification of chemical plumes using a portable underwater membrane introduction mass spectrometer. Trends in Analytical Chemistry 25: 637-646

Schijf, J., and R.H. Byrne. 2006. Progressive dolomitization of Florida limestone recorded by alkaline earth element concentrations in saline, geothermal, submarine springs. Journal of Geophysical Research – Oceans (in-press)

Chaudhary, A., van Amerom, F.H.W., Short, R.T., and Bhansali, S. 2005. Fabrication and Testing of a Miniature Cylindrical Ion Trap Mass Spectrometer Constructed from Low Temperature Co-fired Ceramics, Accepted for Publication by the International Journal of Mass Spectrometry. (12/05)

Rashid, H. & Boyle, E. A. Mixed-layer deepening during Heinrich events: A multi-planktonic foraminiferal delta18O approach. Science doi: 10.1126/science.1146138 (2007) Click here to read the article.

Suthard, B.C., Hine, A.C., Locker, S.D., Duncan, D.S., Morton, R.A., Edgar, N.T., and Hansen, M.E. 2005. A Siliciclastic-Infilled Sedimentary Basin Within a Large Carbonate Platform, Tampa Bay, Florida.  Gulf of Mexico Integrated Science, Tampa Bay Study, Fourth Annual Science Conference, February 8 & 9, 2005. Click here to see the poster in PDF format. (07-05)

Wright, E.E., Hine, A.C., Goodbred, S.L., and Locker, S.D. 2005. The effect of sea-level and climate change on the development of a mixed siliciclastic-carbonate, deltaic coastline: Suwannee River, Florida, USA: Journal of Sedimentary Research, v. 75, p., 621-635. (07-05)

Jarrett, B.D., Hine, A.C., Halley, R.B., Naar, D.F., Locker, S.D., Neumann, A.C., Twichell, D., Hu, C., Donahue, B.T., Jaap, W.C., Palandro, D. and Ciembronowicz, K. 2005. Strange bedfellows--a deep-water hermatypic coral reef superimposed on a drowned barrier island; southern Pulley Ridge, SW Florida platform margin: Marine Geology, v. 214, p. 295-307. (01-05)

Liu, Y., and R.H. Weisberg, 2007: Ocean currents and sea surface heights estimated across the West Florida Shelf. Journal of Physical Oceanography, 37(6), 1697-1713. (06/27)

Liu, Y., Weisberg, R.H. and Shay, L.K., 2007: Current patterns on the West Florida Shelf from joint Self-Organizing Map analyses of HF radar and ADCP data. Journal of Atmospheric and Oceanic Technology, 24(4), 702–712. (04/17)

Liu, Y., Weisberg, R.H. and Mooers, C.N.K. 2006: Performance evaluation of the Self-Organizing Map for feature extraction. J. Geophys . Res., 111, C05018, doi:10.1029/2005jc003117. (05/06)

Virmani, J.I., and Weisberg, R.H. The 2005 Hurricane Season: An Echo of the Past or a Harbinger of the Future? Geophysical Research Letters, 33, L05707, doi:10.1029/2005GL025517, 2006. (03/06)

Liu, Y., Weisberg, R.H. and He, R. 2006: Sea surface temperature patterns on the West Florida Shelf using Growing Hierarchical Self-Organizing Maps. J. Atmos. Oceanic Technol., 23(2), 325-338. (03/06)

Liu, Y., and Weisberg, R.H. 2005. Momentum balance diagnoses for the West Florida Shelf. Cont. Shelf Res., 25, 2054-2074. (10/05)

He, R., Liu, Y., and Weisberg, R.H. 2004. Coastal ocean wind fields gauged against the performance of an ocean circulation model. Geophys. Res. Lett., 31, L14303, doi:10.1029/2003GL019261. (09/05)

Liu, Y. and Weisberg, R.H. 2005. Patterns of ocean current variability on the West Florida Shelf using the self-organizing map. J. Geophys. Res., 110, C06003, doi:10.1029/2004JC002786. (09/05)

Virmani, J.I. and Weisberg, R.H. 2005. Relative Humidity over the West Florida Continental Shelf. Mon Wea Rev., 133, 1671-1686.(09/05)

Liu, Y., X.S. Liang, and R.H. Weisberg, 2007: Rectification of the bias in the wavelet power spectrum. Journal of Atmospheric and Oceanic Technology, 24(12), 2093-2102.

Galperin, B. and Sukoriansky, S. Energy spectra and zonal flows on the beta-plane, on a rotating sphere, and on giant planets, in Marine Turbulence: Theories, Observations, and Models, edited by H. Baumert, J. Simpson, and J. S¨undermann, pp. 472–493, Cambridge University Press, 2005.

Sukoriansky, S., Galperin, B., and Staroselsky, I.: A quasinormal scale elimination model of turbulent flows with stable stratification, Physics of Fluids, 17, 085 107–1–28, 2005.

Sukoriansky, S., Galperin, B., and Perov, V.: Application of a new spectral theory of stably stratified turbulence to atmospheric boundary layers over sea ice, Boundary-Layer Meteorology, 117, 231–257, 2005. This publication is available in PDF format by clicking here.

Sukoriansky, S., Galperin, B., and Perov, V.: A quasi-normal scale elimination model of turbulence and its application to stably stratified flows, Nonlinear Processes in Geophysics, 13, 9–22, 2006. This publication is available in PDF format by clicking here.

Galperin, B., Sukoriansky, S., Dikovskaya, N., Read, P.L., Yamazaki, Y.H., and Wordsworth, R: Anisotropic turbulence and zonal jets in rotating flows with a beta-effect, Nonlinear Processes in Geophysics, 13, 89-96, 2006. This publication is available in PDF format by clicking here.

Broadbent, H.A., Ivanov, S.Z., and Fries, D.P. 2007. A miniature, low cost CTD system for coastal salinity measurements. Measurement Science and Technology 18 3295-3302 doi:10.1088/0957-0233/18/11/005 (09/20)

English, D.C., and Carder, K.L. 2006. Determining Bottom Reflectance and Water Optical Properties Using Unmanned Underwater Vehicles under Clear or Cloudy Skies. Journal of Atmospheric and Oceanic Technology 23:2 314-324. (03/06)

Hu, C., Nelson, J., Johns, E., Chen, Z., Weisberg, R., and Muller-Karger, F.E. 2005. Mississippi River water in the Florida Straits and in the Gulf Stream off Georgia in summer 2004. Geophys. Res. Lett., 32, L14606, doi:10.1029/2005GL022942. (12/05)

Hu, C., Muller-Karger, F.E., Taylor, C., Carder, K.L., Kelble, C., Johns, E., and Heil, C. 2005. Red tide detection and tracing using MODIS fluorescence data: A regional example in SW Florida coastal waters. Remote Sens. Environ., 97:311-321.(12/05)

Hong, H., Wu, J., Shang, S., and Hu, C. 2005. Absorption and fluorescence of chromophoric dissolved organic matter in the Pearl River Estuary, South China. Mar. Chem., 97:78-89. (12/05)

Shang, S., Zhang, C., Hong, H., Liu, G., Wong, T.F., Hu, C., and Huang B. 2005. Hydrographic and biological changes in the Taiwan Strait during the 1997-1998 El Nino winter. Geophys. Res. Lett., 32, L11601, doi:10.1029/2005GL022578. (12/05)

Biggs, D.C., Jochens, A.E., Howard, M.K., DiMarco, S.F., Mullin, K.D., Leben, R.R., Muller-Karger, F.E., and Hu, C. 2005. Eddy forced variations in on-margin and off-margin summertime circulation along the 1000 m isobath of the northern Gulf of Mexico, 2000-2003, and links with sperm whale distributions along the middle shelf. AGU Geophys Monogr. (New Developments in the circulation of the Gulf of Mexico), 71-85. (12/05)

Muller-Karger, F.E., Varela, R., Thunell, R., Luerssen, R., Hu, C., and Walsh, J.J. 2005. The importance of continental margins in the global carbon cycle. Geophys. Res. Lett. 32, L01602, doi:10.1029/2004GL021346. (12/05)

Muller-Karger, F.E., Hu, C., Andréfout, S,. and Varela, R. 2005. The color of the coastal ocean and applications in the solution of research and management problems In: Remote Sensing of Aquatic Coastal Environments (R. L. Miller, C. E. Del Castillom, and B. A. McKee eds.), Springer, pp 101-127. (12/05)

Andréfouët, S., Hochberg, E.J., Chevillon, C., Muller-Karger, F.E., Brock, J.C., and Hu, C. 2005. Multi-scale remote sensing of coral reefs. In: Remote Sensing of Aquatic Coastal Environments (R. L. Miller, C. E. Del Castillom, and B. A. McKee eds.), Springer, pp 297-315.(12/05)

Cannizzaro, J.P., Carder, K.L., Chen, F.R., Heil, C.A., and Vargo, G.A. Accepted. A novel technique for detection of the toxic dinoflagellate, Karenia brevis, in the Gulf of Mexico from remotely sensed ocean color data, Continental Shelf Res . (04/05)

Lee, Z.P. and Carder, K.L. 2005. Hyperspectral remote sensing. In R.L. Miller (eds), Remote Sensing of Coastal Aquatic Environments, Chapt. 8, Springer, Netherlands , pp. 181-204. (04/05)

Lee, Z.P., Darecki, M., Carder, K.L., Davis, C.O., Stramski, D., and Rhea, W.J. 2005. Diffuse attenuation coefficient of downwelling irradiance: An evaluation of remote sensing methods, J Geophys. Res. 110( C02017) :148-227. (04/05)

English, D., Carder, K.L. et al., accepted with minor revisions. Determining bottom reflectance and water optical properties using Unmanned Underwater Vehicles under clear or cloudy skies, J.Atmos.Oceanic Tech. (04/05)