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Reef Indicators Lab
University of South Florida, St. Petersburg
College of Marine Science

Quantifying Ecological and Economic Impacts of Tropical Cyclones on Coral Reefs and Coastal Water Quality in South Florida

Managing and evaluating estuarine health (i.e. Biscayne Bay) bibliography:

Ammann, L. P., W. T. Waller, J. H. Kennedy, K. L. Dickson and F. L. Mayer (1997). "Power, sample size and taxonomic sufficiency for measures of impact in aquatic systems." Environmental Toxicology and Chemistry 16(11): 2421-2431.

Anderson, M. J. and A. A. Thompson (2004). "Multivariate control charts for ecological and environmental monitoring." Ecological Applications 14(6): 1921-1935.

Berkelmans, R., J. C. Hendee, P. A. Marshall, P. V. Ridd, A. R. Orpin and D. Irvine (2002). "Automatic weather stations: Tools for managing and monitoring potential impacts to coral reefs." Marine Technology Society Journal 36(1): 29-38.

Bhat, M. and A. Stamatiades (2003). "Institutions, incentives, and resource use conflicts: The case of Biscayne Bay, Florida." Population and Environment 24(6): 485-509.

Bruner, L. H., G. J. Carr, R. D. Curren and M. Chamberlain (1998). "Validation of alternative methods for toxicity testing." Environmental Health Perspectives 106: 477-484.

Bruner, L. H., G. J. Carr, J. W. Harbell and R. D. Curren (2002). "An investigation of new toxicity test method performance in validation studies: 1. toxicity test methods that have predictive capacity no greater than chance." Human & Experimental Toxicology 21(6): 305-312.

Bruner, L. H., G. J. Carr, J. W. Harbell and R. D. Curren (2002). "An investigation of new toxicity test method performance in validation studies: 2. comparison of three measures of toxicity test performance." Human & Experimental Toxicology 21(6): 313-323.

Bruner, L. H., G. J. Carr, J. W. Harbell and R. D. Curren (2002). "An investigation of new toxicity test method performance in validation studies: 3. sensitivity and specificity are not independent of prevalence or distribution of toxicity." Human & Experimental Toxicology 21(6): 325-334.

Burton, G. A., C. G. Ingersoll, L. C. Burnett, M. Henry, M. L. Hinman, S. J. Klaine, P. F. Landrum, P. Ross and M. Tuchman (1996). "A comparison of sediment toxicity test methods at three Great Lake Areas of Concern." Journal of Great Lakes Research 22(3): 495-511.

Caeiro, S., M. H. Costa, T. B. Ramos, F. Fernandes, N. Silveira, A. Coimbra, G. Medeiros and M. Painho (2005). "Assessing heavy metal contamination in Sado Estuary sediment: An index analysis approach." Ecological Indicators 5(2): 151-169.

Carr, R. L., J. R. Richardson, J. A. Guarisco, A. Kachroo, J. E. Chambers, T. A. Couch, G. C. Durunna and E. C. Meek (2002). "Effects of PCB exposure on the toxic impact of organophosphorus insecticides." Toxicological Sciences 67(2): 311-321.

Carr, R. S. and D. C. Chapman (1995). "Comparison of Methods for Conducting Marine and Estuarine Sediment Porewater Toxicity Tests - Extraction, Storage, and Handling Techniques." Archives of Environmental Contamination and Toxicology 28(1): 69-77.

Carr, R. S., D. C. Chapman, C. L. Howard and J. M. Biedenbach (1996). "Sediment quality triad assessment survey of the Galveston Bay, Texas system." Ecotoxicology 5(6): 341-364.

Carr, R. S., D. C. Chapman, D. D. Macdonald, H. Windom and B. J. Presley (1994). "Concordance between Sediment Quality Assessment Guidelines and Sediment Toxicity Tests." Abstracts of Papers of the American Chemical Society 207: 32-Envr.

Carr, R. S., E. R. Long, H. L. Windom, D. C. Chapman, G. Thursby, G. M. Sloane and D. A. Wolfe (1996). "Sediment quality assessment studies of Tampa Bay, Florida." Environmental Toxicology and Chemistry 15(7): 1218-1231.

Carr, R. S., P. A. Montagna, J. M. Biedenbach, R. Kalke, M. C. Kennicutt, R. Hooten and G. Cripe (2000). "Impact of storm-water outfalls on sediment quality in Corpus Christi Bay, Texas, USA." Environmental Toxicology and Chemistry 19(3): 561-574.

Carr, R. S., M. Nipper, J. M. Biedenbach, R. L. Hooten, K. Miller and S. Saepoff (2001). "Sediment toxicity identification evaluation (TIE) studies at marine sites suspected of ordnance contamination." Archives of Environmental Contamination and Toxicology 41(3): 298-307.

Chambers, J. E., J. S. Boone, R. L. Carr, H. W. Chambers and D. L. Straus (2002). "Biomarkers as predictors in health and ecological risk assessment." Human and Ecological Risk Assessment 8(1): 165-176.

Chapman, P. M., B. Anderson, S. Carr, V. Engle, R. Green, J. Hameedi, M. Harmon, P. Haverland, J. Hyland, C. Ingersoll, E. Long, J. Rodgers, M. Salazar, P. K. Sibley, P. J. Smith, R. C. Swartz, B. Thompson and H. Windom (1997). "General guidelines for using the sediment quality triad." Marine Pollution Bulletin 34(6): 368-372.

Dicks, B. (1984). "Oil Pollution in the Red-Sea - Environmental Monitoring of an Oilfield in a Coral Area, Gulf of Suez." Deep-Sea Research Part a-Oceanographic Research Papers 31(6-8): 833-854.

Dodge, R. E. and T. R. Gilbert (1984). "Chronology of Lead Pollution Contained in Banded Coral Skeletons." Marine Biology 82(1): 9-13.

Dodge, R. E., T. D. Jickells, A. H. Knap, S. Boyd and R. P. M. Bak (1984). "Reef-Building Coral Skeletons as Chemical Pollution (Phosphorus) Indicators." Marine Pollution Bulletin 15(5): 178-187.

Edwards, A. J. and S. Clark (1998). "Coral transplantation: A useful management tool or misguided meddling?" Marine Pollution Bulletin 37(8-12): 474-487.

Engle, V. D. and J. K. Summers (1998). "Determining the causes of benthic condition." Environmental Monitoring and Assessment 51(1-2): 381-397.

Engle, V. D. and J. K. Summers (1999). "Refinement, validation, and application of a benthic condition index for northern Gulf of Mexico estuaries." Estuaries 22(3A): 624-635.

Engle, V. D., J. K. Summers and G. R. Gaston (1994). "A Benthic Index of Environmental-Condition of Gulf-of-Mexico Estuaries." Estuaries 17(2): 372-384.

Fichez, R., M. Adjeroud, Y. M. Bozec, L. Breau, Y. Chancerelle, C. Chevillon, P. Douillet, J. M. Fernandez, P. Frouin, M. Kulbicki, B. Moreton, S. Ouillon, C. Payri, T. Perez, P. Sasal and J. Thebault (2005). "A review of selected indicators of particle, nutrient and metal inputs in coral reef lagoon systems." Aquatic Living Resources 18(2): 125-147.

Finkl, C. W. and R. H. Charlier (2003). "Sustainability of subtropical coastal zones in southeastern Florida: Challenges for urbanized coastal environments threatened by development, pollution, water supply, and storm hazards." Journal of Coastal Research 19(4): 934-943.

Fong, P., M. E. Jacobson, M. C. Mescher, D. Lirman and M. C. Harwell (1997). "Investigating the management potential of a seagrass model through sensitivity analysis and experiments." Ecological Applications 7(1): 300-315.

Gentile, J. H., M. A. Harwell, W. Cropper, C. C. Harwell, D. DeAngelis, S. Davis, J. C. Ogden and D. Lirman (2001). "Ecological conceptual models: a framework and case study on ecosystem management for South Florida sustainability." Science of the Total Environment 274(1-3): 231-253.

Gilbert, A. L. and H. M. Guzman (2001). "Bioindication potential of carbonic anhydrase activity in anemones and corals." Marine Pollution Bulletin 42(9): 742-744.

Hallock, P., B. H. Lidz, E. M. Cockey-Burkhard and K. B. Donnelly (2003). "Foraminifera as bioindicators in coral reef assessment and monitoring: The FORAM Index." Environmental Monitoring and Assessment 81(1-3): 221-238.

Hayes, R. L. and N. I. Goreau (1998). "The significance of emerging diseases in the tropical coral reef ecosystem." Revista De Biologia Tropical 46: 173-185.

Haynes, D. and D. Toohey (1998). "The use of transplanted, cultured mussels (Mytilus edulis) to monitor pollutants along the ninety mile beach, Victoria, Australia III. Heavy metals." Marine Pollution Bulletin 36(5): 396-399.

Hooten, R. L. and R. S. Carr (1998). "Development and application of a marine sediment pore-water toxicity test using Ulva fasciata zoospores." Environmental Toxicology and Chemistry 17(5): 932-940.

Hyland, J. L., R. F. Van Dolah and T. R. Snoots (1999). "Predicting stress in benthic communities of southeastern US estuaries in relation to chemical contamination of sediments." Environmental Toxicology and Chemistry 18(11): 2557-2564.

Jameson, S. C., M. V. Erdmann, J. R. Karr and K. W. Potts (2001). "Charting a course toward diagnostic monitoring: A continuing review of coral reef attributes and a research strategy for creating coral reef indexes of biotic integrity." Bulletin of Marine Science 69(2): 701-744.

Linton, D. M. and G. F. Warner (2003). "Biological indicators in the Caribbean coastal zone and their role in integrated coastal management." Ocean & Coastal Management 46(3-4): 261-276.

Llanso, R. J., L. C. Scott, D. M. Dauer, J. L. Hyland and D. E. Russell (2002). "An estuarine benthic index of biotic integrity for the Mid-Atlantic region of the United States. I. Classification of assemblages and habitat definition." Estuaries 25(6A): 1219-1230.

Llanso, R. J., L. C. Scott, J. L. Hyland, D. M. Dauer, D. E. Russell and F. W. Kutz (2002). "An estuarine benthic index of biotic integrity for the Mid-Atlantic region of the United States. II. Index Development." Estuaries 25(6A): 1231-1242.

Macauley, J. M., J. K. Summers and V. D. Engle (1999). "Estimating the ecological condition of the estuaries of the Gulf of Mexico." Environmental Monitoring and Assessment 57(1): 59-83.

MacDonald, D. D., R. S. Carr, F. D. Calder, E. R. Long and C. G. Ingersoll (1996). "Development and evaluation of sediment quality guidelines for Florida coastal waters." Ecotoxicology 5(4): 253-278.

McKenna, S. A., R. H. Richmond and G. Roos (2001). "Assessing the effects of sewage on coral reefs: Developing techniques to detect stress before coral mortality." Bulletin of Marine Science 69(2): 517-523.

Morgan, M. B. and T. W. Snell (1999). "Assessing coral stress responses at the level of gene expression." American Zoologist 39(5): 122A-122A.

Morgan, M. B., D. L. Vogelien and T. W. Snell (2001). "Assessing coral stress responses using molecular biomarkers of gene transcription." Environmental Toxicology and Chemistry 20(3): 537-543.

Nickerson-Tietze, D. J. (2000). "Scientific characterization and monitoring: Its application to integrated coastal management in Malaysia." Ecological Applications 10(2): 386-396.

Nipper, M. and R. S. Carr (2001). "Porewater toxicity testing: A novel approach for assessing contaminant impacts in the vicinity of coral reefs." Bulletin of Marine Science 69(2): 407-420.

Nipper, M., R. S. Carr, J. M. Biedenbach, R. L. Hooten and K. Miller (2002). "Toxicological and chemical assessment of ordnance compounds in marine sediments and porewaters." Marine Pollution Bulletin 44(8): 789-806.

Nipper, M., R. S. Carr, J. M. Biedenbach, R. L. Hooten, K. Miller and S. Saepoff (2001). "Development of marine toxicity data for ordnance compounds." Archives of Environmental Contamination and Toxicology 41(3): 308-318.

Ranasinghe, J. A., J. B. Frithsen, F. W. Kutz, J. F. Paul, D. E. Russell, R. A. Batiuk, J. L. Hyland, J. Scott and D. M. Dauer (2002). "Application of two indices of benthic community condition in Chesapeake Bay." Environmetrics 13(5-6): 499-511.

Redmond, M. S., P. A. Crocker, K. M. McKenna, E. A. Petrocelli, K. J. Scott and C. R. Demas (1996). "Sediment toxicity testing with the amphipod Ampelisca abdita in Calcasieu Estuary, Louisiana." Archives of Environmental Contamination and Toxicology 30(1): 53-61.

Riegl, B., J. L. Korrubel and C. Martin (2001). "Mapping and monitoring of coral communities and their spatial patterns using a surface-based video method from a vessel." Bulletin of Marine Science 69(2): 869-880.

Ringwood, A. H., M. E. DeLorenzo, P. E. Ross and A. F. Holland (1997). "Interpretation of Microtox(R) solid-phase toxicity tests: The effects of sediment composition." Environmental Toxicology and Chemistry 16(6): 1135-1140.

Schowanek, D., R. Carr, H. David, P. Douben, J. Hall, H. Kirchmann, L. Patria, P. Sequi, S. Smith and S. Webb (2004). "A risk-based methodology for deriving quality standards for organic contaminants in sewage sludge for use in agriculture - Conceptual Framework." Regulatory Toxicology and Pharmacology 40(3): 227-251.

Scott, G. I., M. H. Fulton, D. W. Moore, E. F. Wirth, G. T. Chandler, P. B. Key, J. W. Daugomah, E. D. Strozier, J. Devane, J. R. Clark, M. A. Lewis, D. B. Finley, W. Ellenberg and K. J. Karnaky (1999). "Assessment of risk reduction strategies for the management of agricultural nonpoint source pesticide runoff in estuarine ecosystems." Toxicology and Industrial Health 15(1-2): 200-213.

Scott, P. J. B. and M. Davies (1997). "Retroactive determination of industrial contaminants in tropical marine communities." Marine Pollution Bulletin 34(11): 975-980.

Shafir, S., J. Van Rijn and B. Rinkevich (2003). "The use of coral nubbins in coral reef ecotoxicology testing." Biomolecular Engineering 20(4-6): 401-406.

Smith, L. D., M. Devlin, D. Haynes and J. P. Gilmour (2005). "A demographic approach to monitoring the health of coral reefs." Marine Pollution Bulletin 51(1-4): 399-407.

Thomas, S. D. and Q. X. Li (2000). "Immunoaffinity chromatography for analysis of polycyclic aromatic hydrocarbons in corals." Environmental Science & Technology 34(12): 2649-2654.

Thompson, R. E., E. O. Voit and G. I. Scott (2000). "A probabilistic model for predicting distributions of PAH ratios between oysters and marine sediments." Ecological Modelling 135(2-3): 231-242.

Tilley, D. R. and M. T. Brown (1998). "Wetland networks for stormwater management in subtropical urban watersheds." Ecological Engineering 10(2): 131-158.

Van Dolah, R. F., J. L. Hyland, A. F. Holland, J. S. Rosen and T. R. Snoots (1999). "A benthic index of biological integrity for assessing habitat quality in estuaries of the southeastern USA." Marine Environmental Research 48(4-5): 269-283.