Casper, E.T., J.H. Paul, M.C. Smith, and M. Gray. 2004. The detection and quantification of the red tide Dinoflagellate Karenia brevis by real-time NABSA. Appl. Environ. Microbiol. 70:4727-4732.(12/04)

Wawrik, B., J.H. Paul, D.A. Bronk, D. John, M. Gray. 2004. High rates of ammonium recycling drive phytoplankton productivity in the offshore Mississippi River Plume. Aquatic Microbial Ecology 35:175-184. (12/04)

Carnahan, E.A., Hoare, A.M., Hallock, P., Lidz, B.H., and Reich, C.D. 2008. Distributions of Heavy Metals and Foraminiferal Assemblages in Sediments in Biscayne Bay, Florida, USA. Journal of Coastal Research 24(1):159-169. (01/08)

Sammarco, P.W., Hallock, P., Lang, J.C., LeGore, R.S. 2007. Roundtable Discussion Groups Summary Papers: Environmental Bio-Indicators in Coral Reef Ecosystems: The Need to Align Research, Monitoring, and Environmental Regulation. Environmental Bioindicators 2(1):35-46. (01/08)

Pomar, L., Hallock, P. 2007. Changes in coral-reef structure through the Miocene in the Mediterranean province: Adaptive versus environmental influence. Geology 35:899-902. (01/08)

Fisher, E.M., Fauth, J.E., Hallock, P, Woodley, C.M. 2007. Lesion regeneration rates in reef-building coral Montastraea spp. as indicators of colony condition. Marine Ecology Progress Series 339:61-71 (01/08)

Crevison, H, Hallock, P. 2007. Anomalous features observed on tests of live Archaiasine foraminifers from the Florida Keys, USA. Journal of Foraminiferal Research 37(3):223-233. (01/08)

Pichler, T., Amend, J.P., Garey, J., Hallock, P., Hsia, N.P., Karlen, D.J., Meyer-Dombard, D.R., McCloskey, B.J., and Price, R.E. 2006. A natural laboratory to study arsenic geobiocomplexity. EOS 87(23): 221,225. (01/08)

Hallock, P., Williams, D.E., Fisher, E.M., and Toler, S.K. 2006. Bleaching in Foraminifera with algal symbionts: implications for reef monitoring and risk assessment. Anuário do Instituto de Geosciências – UFRJ, 29(1): 108-128. (01/08)

Hallock, P., Williams, D.E., Toler, S.K., Fisher, E.M., and Talge, H.K. 2006. Bleaching in reef-dwelling foraminifers: implications for reef decline. Proceedings, 10th International Coral Reef Symposium, Okinawa, Japan, June 2004. pp. 729-737. (01/08)

Hallock, P., Sheps, K., Chaproniere, G.C.H., and Howell, M. 2006. Larger benthic foraminifers of the Marion Plateau, NE Australia (ODP Leg 194): Comparison of faunas from bryozoan (Site 1193, 1194) and red-algal (Site 1196-98) dominated carbonate platforms. Proceedings of the Ocean Drilling Program Scientific Results, Volume 194, Chapter 2, p. 1-31. (01/08)

Downs, C.A., Fauth, J.E., Wetzl, D., Hallock, P., Halas, J.F., Halas, J.C., Curry, R., and Woodley, C.M. 2006.Investigating coral reef degradation at Alina’s Reef in Biscayne National Park: White grunt (Haemulon plumerieri) as a biological indicator. Environmental Forensics 7:15-32. (01/08)

Crevison, H, Hallock, P., Mcrae, G. 2006. Sediment Cores from the Florida Keys (USA): Is Resolution Sufficient for Environmental Applications? Journal of Environmental Micropaleontology, Microbiology, and Meiobenthology 3: 61-82. (01/08)

Remsen, A., Samson, Hopkins, T., 2004. _What you see is not what you catch: a comparison of concurrently collected net, Optical Plankton Counter, and Shadowed Image Particle Profiling Evaluation Recorder data from the northeast Gulf of Mexico_. Deep Sea Research I, 51 (1), 129-151. (02/06)

Luo, T., Kramer, K., Goldgof, D., Hall, L., Samson, S., Remsen, A., Hopkins, T., 2005. _Active Learning to Recognize Multiple Types of Plankton_, Journal of Machine Learning Research 6, 589-613. (02/06)

Daly, K.L., R. H. Byrne, A. G. Dickson, S. M. Gallager, M. J. Perry, and M. K. Tivey. 2004. Chemical and biological sensors for time-series research: Current status and new directions. Marine Technology Society Journal 38 (2):122-144. (12/04)

Ju, S.-J., K. Scolardi, K. L. Daly , and H. R. Harvey . 2004. Understanding the trophic role of ctenophore Callianira antarctica in an Antarctic ecosystem using lipid biomarkers. Polar Biology 27: 782-792. (12/04)

Daly, K.L. and J. Zimmerman. 2004. Comparisons of morphology and neritic distributions of Euphausia crystallorophias and Euphausia superba furcilia during autumn and winter west of the Antarctic Peninsula . Polar Biology 28(1): 72-81. (12/04)

Daly, K.L.   2004. Overwintering growth and development of larval Euphausia superba : An interannual comparison under varying environmental conditions west of the Antarctic Peninsula . Deep-Sea Research II 51: 2139-2168. (12/04)

Luo, T., Kramer, K., Goldgof, D., Hall, L., Samson, S., Remsen, A., Hopkins, T., 2004. Recognizing plankton images from the Shadow Image Particle Profiling Evaluation Recorder. IEEE Transactions on Systems, Man, and Cybernetics Part B. 34 (4), 1753-1762

Mann, D.A., Colbert, D.E., Gaspard, J.C. III, Casper, B.M., Cook, M.L.H., Reep, R.L., Bauer, G.B. 2005. Temporal resolution of the manatee (Trichechus manatus) auditory system. J. Comp. Physiol. 191: 903-908.(12/05)

Popper, A.N., Smith, M.E., Cott, P., Hanna, B., MacGillivray, A., Austin, M., and Mann, D. 2005. Effect of seismic air-gun use on fish hearing. J. Acoust. Soc. Am. 117: 3958-3971.(06/05)

Mann, D.A., Popper, A.N., and Wilson, B. 2005. Herring do not detect ultrasound. Proc. Roy. Soc. Lond. Biol. Let. 1: 158-161.(06/05)

Egner, S. A., and Mann, D.A. 2005. Auditory sensitivity of sergeant major damselfish (Abudefduf saxatilis) from post-settlement juvenile to adult. Mar. Ecol. Prog. Ser. 285: 213-222.(06/05)

Nowacek, D.P. Casper, B.M., Wells, R.S., Nowacek, S.M., and Mann, D.A. 2003. Intraspecific and geographic variability of West Indian manatee (Trichechus manatus spp.) vocalizations. J. Acoust. Soc. Am. 114: 66-69.(06/05)

Hueter, R., Mann, D., Sisneros, J., Maruska, K., Demski, L. 2004. Sensory biology of elasmobranches. In: The Biology of Sharks and their Relatives. Carrier, Musick, Heithaus eds. CRC Press.

Mann, D.A., and Jarvis, S.M. (2004). Potential sound production by a deep-sea fish. J. Acoust. Soc. Am. 115: 2331-2333.